Publications

Research papers and other publications

Abascal, F., A. Corvelo, F. Cruz, J. L. Villanueva-Cañas, A. Vlasova, M. Marcet-Houben, B. Martı́nez-Cruz, et al. 2016. “Extreme Genomic Erosion After Recurrent Demographic Bottlenecks in the Highly Endangered Iberian Lynx.” Genome Biology, Start Page–End Page. https://doi.org/10.1186/s13059-016-1090-1.

Aguado-Flor, E, Fuentes-Raspall MJ, R Gonzalo, C Alonso, T Ramón Y Cajal, D Fisas, A Seoane, et al. 2022. “Cell Senescence-Related Pathways Are Enriched in Breast Cancer Patients with Late Toxicity After Radiotherapy and Low Radiation-Induced Lymphocyte Apoptosis.” Frontiers in Oncology. https://doi.org/10.3389/fonc.2022.825703.

Almanza-Aguilera, Enrique, Mireia Urpi-Sarda, Rafael Llorach, Rosa Vázquez-Fresno, Mar Garcia-Aloy, Francesc Carmona, Alex Sanchez, et al. 2017. “Microbial Metabolites Are Associated with a High Adherence to a Mediterranean Dietary Pattern Using a 1H-NMR-Based Untargeted Metabolomics Approach.” The Journal of Nutritional Biochemistry 48: 36–43. https://doi.org/10.1016/j.jnutbio.2017.06.001.

Bazzocco, S, H Dopeso, Á Martı́nez-Barriocanal, E Anguita, R Nieto, J Li, E Garcı́a-Vidal, et al. 2021. “Identification of ZBTB18 as a Novel Colorectal Tumor Suppressor Gene Through Genome-Wide Promoter Hypermethylation Analysis.” Clinical Epigenetics, April. https://doi.org/10.1186/s13148-021-01070-0.

Bech, Jaume, Pedro Tume, Nuria Roca, and Ferran Reverter. 2015. “Geochemical Distribution of Potentially Harmful Elements in Periurban Soils of a Mediterranean Region: Manresa (Catalonia, Spain).” Fresenius Environmental Bulletin 24 (12A): 4379–89.

Bellio, C, M Emperador, P Castellano, A Gris-Oliver, F Canals, A Sánchez-Pla, E Zamora, et al. 2022. “GDF15 Is an Eribulin Response Biomarker Also Required for Survival of DTP Breast Cancer Cells.” Cancers, May. https://doi.org/10.3390/cancers14102562.

Breschi, Alessandra, Manuel Muñoz-Aguirre, Valentin Wucher, Carrie A. Davis, Diego Garrido-Martı́n, Sarah Djebali, Jesse Gillis, et al. 2020. “A Limited Set of Transcriptional Programs Define Major Cell Types.” Genome Research 30: 1047–59. https://doi.org/10.1101/gr.263186.120.

Cantó, E., M. Tintoré, L. M. Villar, C. Costa, R. Nurtdinov, J. C. Álvarez-Cermeño, G. Arrambide, et al. 2015. “Chitinase 3-Like 1: Prognostic Biomarker in Clinically Isolated Syndromes.” Brain. https://doi.org/10.1093/brain/awv017.

Castel, SE, A Cervera, P Mohammadi, F Aguet, F Reverter, A Wolman, R Guigo, A Vasileva, and T Lappalainen. 2018. “Modified Penetrance of Coding Variants by Cis-Regulatory Variation Contributes to Disease Risk.” Nature Genetics 50: 1327–34. https://doi.org/10.1038/s41588-018-0192-y.

Castellano-Escuder, P, C Andrés-Lacueva, and A Sánchez-Pla. 2021. “The Fobitools Framework: The First Steps Towards Food Enrichment Analysis.” Bioinformatics (Oxford, England), October. https://doi.org/10.1093/bioinformatics/btab626.

Castellano-Escuder, P, R González-Domı́nguez, Wishart DS, C Andrés-Lacueva, and A Sánchez-Pla. 2020. “FOBI: An Ontology to Represent Food Intake Data and Associate It with Metabolomic Data.” Database : The Journal of Biological Databases and Curation, January. https://doi.org/10.1093/databa/baaa033.

Castellano-Escuder, P, R González-Domı́nguez, Vaillant MF, P Casas-Agustench, N Hidalgo-Liberona, N Estanyol-Torres, T Wilson, M Beckmann, Lloyd AJ, and C Andres-Lacueva. 2022. “Assessing Adherence to Healthy Dietary Habits Through the Urinary Food Metabolome: Results from a European Two-Center Study.” Frontiers in Nutrition. https://doi.org/10.3389/fnut.2022.880770.

Castellano-Escuder, Pol, Raúl González-Domı́nguez, Francesc Carmona-Pontaque, Cristina Andrés-Lacueva, and Alex Sánchez-Pla. 2021. “POMAShiny: A User-Friendly Web-Based Workflow for Metabolomics and Proteomics Data Analysis.” Edited by Manja Marz. PLOS Computational Biology 17 (7): e1009148. https://doi.org/10.1371/journal.pcbi.1009148.

Corral-Pujol, M, B Arpa, E Rosell-Mases, L Egia-Mendikute, C Mora, T Stratmann, A Sanchez, et al. 2023. “NOD Mouse Dorsal Root Ganglia Display Morphological and Gene Expression Defects Before and During Autoimmune Diabetes Development.” Frontiers in Endocrinology. https://doi.org/10.3389/fendo.2023.1176566.

Cubedo, Marta, S. Malhotra, J. Rio, M. Cubedo, A. Sanchez, X. Montalban, and M. Comabella. 2017. “Gene Expression Profiling Study of Coding and Non-Coding Genes in Peripheral Blood Mononuclear Cells from Multiple Sclerosis Patients Exposed to Teriflunomide in Vitro.” Multiple Sclerosis Journal. https://doi.org/10.1177/1352458517731406.

Cubedo, M., A. Miñarro, and J. M. Oller. 2013. “A Dissimilarity Based on Relevant Population Features.” Journal of Statistical Planning and Inference 143 (2): 346–55. https://doi.org/10.1016/j.jspi.2012.07.019.

Cubedo, M., and J. M. Oller. 2002. “Hypothesis Testing: A Model Selection Approach.” Journal of Statistical Planning and Inference 108 (1): 3–21. https://doi.org/10.1016/S0378-3758(02)00267-7.

David, Romain, Arina Rybina, Jean‐Marie Burel, Jean‐Karim Heriche, Pauline Audergon, Jan‐Willem Boiten, Frederik Coppens, et al. 2023. “‘Be Sustainable’: EOSC‐life Recommendations for Implementation of FAIR Principles in Life Science Data Handling.” The EMBO Journal 42 (23). https://doi.org/10.15252/embj.2023115008.

David, Romain, Arina Rybina, Jean-marie Burel, Jean-Karim Hériché, Pauline Audergon, Jan-Willem Boiten, Frederik Coppens, et al. 2023. “Sustainability of FAIR Life Science Resources and Projects: The "BeSure" Recommendations from EOSC-Life Research Infrastructures.” https://doi.org/10.5281/ZENODO.10018907.

Du Preez, A, S Lefèvre-Arbogast, R González-Domı́nguez, V Houghton, C de Lucia, Low DY, C Helmer, et al. 2022. “Impaired Hippocampal Neurogenesis in Vitro Is Modulated by Dietary-Related Endogenous Factors and Associated with Depression in a Longitudinal Ageing Cohort Study.” Molecular Psychiatry, August. https://doi.org/10.1038/s41380-022-01644-1.

Du Preez, A, S Lefèvre-Arbogast, V Houghton, C de Lucia, Low DY, C Helmer, C Féart, et al. 2021. “The Serum Metabolome Mediates the Concert of Diet, Exercise, and Neurogenesis, Determining the Risk for Cognitive Decline and Dementia.” Alzheimer’s & Dementia : The Journal of the Alzheimer’s Association, August. https://doi.org/10.1002/alz.12428.

Escrich, Raquel, Irmgard Costa, Montserrat Moreno, Marta Cubedo, Elena Vela, Eduard Escrich, and Raquel Moral. 2019. “A High-Corn-Oil Diet Strongly Stimulates Mammary Carcinogenesis, While a High-Extra-Virgin-Olive-Oil Diet Has a Weak Effect, Through Changes in Metabolism, Immune System Function and Proliferation/Apoptosis Pathways.” The Journal of Nutritional Biochemistry 64 (February): 218–27. https://doi.org/10.1016/j.jnutbio.2018.11.001.

Escrich, Raquel, Marta Cubedo, Eduard Escrich, and Raquel Moral. 2019. “Gene Ontology Analysis of Transcriptome Data from DMBA-Induced Mammary Tumors of Rats Fed a High-Corn Oil and a High-Extra Virgin Olive Oil Diet.” Data in Brief 22 (February): 104–8. https://doi.org/10.1016/j.dib.2018.11.135.

Estanyol-Torres, N., C. Domenech-Coca, R. González-Domı́nguez, A. Miñarro, F. Reverter, J. A. Moreno-Muñoz, J. Jiménez, et al. 2023. “A Mixture of Four Dietary Fibres Ameliorates Adiposity and Improves Metabolic Profile and Intestinal Health in Cafeteria-Fed Obese Rats: An Integrative Multi-Omics Approach.” The Journal of Nutritional Biochemistry 111 (January). https://doi.org/10.1016/j.jnutbio.2022.109184.

Fernández Blanco, Rubén, Pilar Rosado, Esteban Vegas, and Ferran Reverter. 2021. “Medical Image Editing in the Latent Space of Generative Adversarial Networks.” Intelligence-Based Medicine 5: 100040. https://doi.org/10.1016/j.ibmed.2021.100040.

Ferreira, Pedro G., Manuel Muñoz-Aguirre, Ferran Reverter, Caio P. Sá Godinho, Abel Sousa, Alicia Amadoz, Reza Sodaei, et al. 2018. “The Effects of Death and Post-Mortem Cold Ischemia on Human Tissue Transcriptomes.” Nature Communications 9 (490). https://doi.org/10.1038/s41467-017-02772-x.

Fissolo, N, L Calvo-Barreiro, H Eixarch, U Boschert, Villar LM, L Costa-Frossard, M Ferrer, et al. 2023. “Molecular Signature Associated with Cladribine Treatment in Patients with Multiple Sclerosis.” Frontiers in Immunology. https://doi.org/10.3389/fimmu.2023.1233546.

Fissolo, N, C Matute-Blanch, M Osman, C Costa, R Pinteac, B Miró, A Sanchez, et al. 2021. “CSF SERPINA3 Levels Are Elevated in Patients with Progressive MS.” Neurology(R) Neuroimmunology & Neuroinflammation, March. https://doi.org/10.1212/nxi.0000000000000941.

Fissolo, N, A Pappolla, J Rio, Villar LM, S Perez-Hoyos, A Sanchez, L Gutierrez, X Montalban, and M Comabella. 2023. “Serum Levels of CXCL13 Are Associated with Teriflunomide Response in Patients with Multiple Sclerosis.” Neurology(R) Neuroimmunology & Neuroinflammation, January. https://doi.org/10.1212/nxi.0000000000200050.

Flores, P, M Salicrú, A Sánchez-Pla, and J Ocaña. 2022. “An Equivalence Test Between Features Lists, Based on the Sorensen-Dice Index and the Joint Frequencies of GO Term Enrichment.” BMC Bioinformatics, May. https://doi.org/10.1186/s12859-022-04739-2.

Flores-Arriaga, J, Aso MC, A Izagirre, Sperber AD, Palsson OS, Bangdiwala SI, Á Lanas, et al. 2023. “Prevalence and Description of Disorders of Gut-Brain Interaction in Spain According to the Results of the Rome Foundation Global Epidemiology Study.” Neurogastroenterology and Motility : The Official Journal of the European Gastrointestinal Motility Society, June. https://doi.org/10.1111/nmo.14582.

Garcı́a-Pérez, Raquel, Jose Miguel Ramirez, Aida Ripoll-Cladellas, Ruben Chazarra-Gil, Winona Oliveros, Oleksandra Soldatkina, Mattia Bosio, et al. 2023. “The Landscape of Expression and Alternative Splicing Variation Across Human Traits.” Cell Genomics 3 (1). https://doi.org/10.1016/j.xgen.2022.100244.

Garrido, D., B. Borsari, M. Calvo, F. Reverter, and R. Guigó. 2021. “Identification and Analysis of Splicing Quantitative Trait Loci Across Multiple Tissues in the Human Genome.” Nature Communications 12 (727): 1–16. https://doi.org/10.1038/s41467-020-20578-2.

Garrido Martı́n, D., M. Calvo, F. Reverter, and R. Guigó. 2023. “A Fast Non-Parametric Test of Association for Multiple Traits.” Genome Biology 24. https://doi.org/10.1186/s13059-023-03076-8.

González-Domı́nguez, R., P. Castellano-Escuder, F. Carmona, S. Lefèvre-Arbogast, D. Y. Low, A. Du Preez, S. R. Ruigrok, et al. 2021. “Food and Microbiota Metabolites Associate with Cognitive Decline in Older Subjects: A 12-Year Prospective Study.” Molecular Nutrition & Food Research 65 (23). https://doi.org/10.1002/mnfr.202100606.

González-Domı́nguez, R, P Castellano-Escuder, S Lefèvre-Arbogast, Low DY, A Du Preez, SR Ruigrok, H Lee, et al. 2022. “Apolipoprotein e and Sex Modulate Fatty Acid Metabolism in a Prospective Observational Study of Cognitive Decline.” Alzheimer’s Research & Therapy, January. https://doi.org/10.1186/s13195-021-00948-8.

Gonzalo Sanz, R., and A. Sanchez-Pla. 2019. “Statistical Analysis of Microarray Data.” In Microarray Bioinformatics, 1986:87–121. Methods in Molecular Biology. https://doi.org/10.1007/978-1-4939-9442-7_5.

Gregori, J, À Sánchez, and J Villanueva. 2023. “msmsEDA & msmsTests: Label-Free Differential Expression by Spectral Counts.” In Statistical Analysis of Proteomic Data. Methods and Tools. Vol. 2426. Methods in Molecular Biology. https://doi.org/10.1007/978-1-0716-1967-4_10.

Hidalgo-Liberona, N., R. González-Domı́nguez, E. Vegas, P. Riso, C. Del Bo’, S. Bernardi, G. Peron, et al. 2021. “Correction to ‘Increased Intestinal Permeability in Older Subjects Impacts the Beneficial Effects of Dietary Polyphenols by Modulating Their Bioavailability’.” Journal of Agricultural and Food Chemistry 69 (10): 3266. https://doi.org/10.1021/acs.jafc.0c04976.

Hidalgo-Liberona, Nicole, Raúl González-Domı́nguez, Esteban Vegas, Patrizia Riso, Cristian Del Bo’, Stefano Bernardi, Gregorio Peron, et al. 2020. “Increased Intestinal Permeability in Older Subjects Impacts the Beneficial Effects of Dietary Polyphenols by Modulating Their Bioavailability.” Journal of Agricultural and Food Chemistry 68 (44): 12476–84. https://doi.org/10.1021/acs.jafc.0c04976.

Juliachs, M, M Pujals, C Bellio, N Meo-Evoli, Duran JM, E Zamora, M Parés, et al. 2022. “Circulating SOD2 Is a Candidate Response Biomarker for Neoadjuvant Therapy in Breast Cancer.” Cancers, August. https://doi.org/10.3390/cancers14163858.

Lanuza, Fabian, Tomas Meroño, Raul Zamora-Ros, Nicola P. Bondonno, Agnetha Linn Rostgaard-Hansen, Alex Sánchez-Pla, Berta Miro, et al. 2023. “Plasma Metabolomic Profiles of Plant-Based Dietary Indices Reveal Potential Pathways for Metabolic Syndrome Associations.” Atherosclerosis 382 (117285). https://doi.org/10.1016/j.atherosclerosis.2023.117285.

Lanzós, A., J. Carlevaro-Fita, L. Mularoni, F. Reverter, E. Palumbo, R. Guigó, and R. Johnson. 2017. “Discovery of Cancer Driver Long Noncoding RNAs Across 1112 Tumour Genomes: New Candidates and Distinguishing Features.” Scientific Reports 7 (41544). https://doi.org/10.1038/srep41544.

Madrid-Gambin, F., M. Garcia-Aloy, R. Vázquez-Fresno, E. Vegas-Lozano, A. Sánchez-Pla, K. Misawa, T. Hase, A. Shimotoyodome, and C. Andres-Lacueva. 2019. “Metabolic Signature of a Functional High-Catechin Tea After Acute and Sustained Consumption in Healthy Volunteers Through 1H NMR Based Metabolomics Analysis of Urine.” Journal of Agricultural and Food Chemistry 67 (11): 3118–24. https://doi.org/10.1021/acs.jafc.8b04198.

Madrid-Gambin, Francisco, Mar Garcia-Aloy, Rosa Vázquez-Fresno, Esteban Vegas-Lozano, M. Carmen Ruiz Villa de Jubany, Koichi Misawa, Tadashi Hase, Akira Shimotoyodome, and Cristina Andres-Lacueva. 2016. “Impact of Chlorogenic Acids from Coffee on Urine Metabolome in Healthy Human Subjects.” Food Research International 89 (November): 1064–70. https://doi.org/10.1016/j.foodres.2016.03.038.

Malhotra, S, C Costa, H Eixarch, Keller CW, L Amman, H Martı́nez-Banaclocha, L Midaglia, et al. 2020. “NLRP3 Inflammasome as Prognostic Factor and Therapeutic Target in Primary Progressive Multiple Sclerosis Patients.” Brain : A Journal of Neurology, May. https://doi.org/10.1093/brain/awaa084.

Malhotra, S., L. M. Villar, C. Costa, L. Midaglia, M. Cubedo, S. Medina, N. Fissolo, et al. 2018. “Circulating EZH2-Positive t Cells Are Decreased in Multiple Sclerosis Patients.” Journal of Neuroinflammation 15 (1). https://doi.org/10.1186/s12974-018-1336-9.

Marco-Ramell, A., S. Tulipani, M. Palau-Rodriguez, R. Gonzalez-Dominguez, A. Miñarro, O. Jauregui, A. Sanchez-Pla, et al. 2018. “Untargeted Profiling of Concordant/Discordant Phenotypes of High Insulin Resistance and Obesity to Predict the Risk of Developing Diabetes.” Journal of Proteome Research 17 (7): 2307–17. https://doi.org/10.1021/acs.jproteome.7b00855.

Matute-Blanch, C, L Calvo-Barreiro, I Carballo-Carbajal, R Gonzalo, A Sanchez, M Vila, X Montalban, and M Comabella. 2020. “Chitinase 3-Like 1 Is Neurotoxic in Primary Cultured Neurons.” Scientific Reports, April. https://doi.org/10.1038/s41598-020-64093-2.

Melé, M., P. G. Ferreira, F. Reverter, D. S. DeLuca, J. Monlong, M. Sammeth, T. R. Young, et al. 2015. “Human Genomics. The Human Transcriptome Across Tissues and Individuals.” Science 348 (6235): 660–65. https://doi.org/10.1126/science.aaa0355.

Meroño, Tomás, Gregorio Peron, Giorgio Gargari, Raúl González-Domı́nguez, Antonio Miñarro, Esteban Vegas-Lozano, Nicole Hidalgo-Liberona, et al. 2022. “The Relevance of Urolithins-Based Metabotyping for Assessing the Effects of a Polyphenol-Rich Dietary Intervention on Intestinal Permeability: A Post-Hoc Analysis of the MaPLE Trial.” Food Research International 159: 111632. https://doi.org/10.1016/j.foodres.2022.111632.

Mostafa, Hamza, Tomás Meroño, Antonio Miñarro, Alex Sánchez-Pla, Fabián Lanuza, Raul Zamora-Ros, Agnetha Linn Rostgaard-Hansen, et al. 2023. “Dietary Sources of Anthocyanins and Their Association with Metabolome Biomarkers and Cardiometabolic Risk Factors in an Observational Study.” Nutrients 15 (5): 1208. https://doi.org/10.3390/nu15051208.

Navarro-Barriuso, J., M. J. Mansilla, M. Naranjo-Gómez, A. Sánchez-Pla, B. Quirant-Sánchez, A. Teniente-Serra, C. Ramo-Tello, and E. M. Martı́nez-Cáceres. 2018. “Comparative Transcriptomic Profile of Tolerogenic Dendritic Cells Differentiated with Vitamin D3, Dexamethasone and Rapamycin.” Scientific Reports 8 (1). https://doi.org/10.1038/s41598-018-33248-7.

Nemours, S, L Castro, D Ribatallada-Soriano, Semidey ME, M Aranda, M Ferrer, A Sanchez, J Morote, G Cantero-Recasens, and A Meseguer. 2022. “Temporal and Sex-Dependent Gene Expression Patterns in a Renal Ischemia-Reperfusion Injury and Recovery Pig Model.” Scientific Reports, April. https://doi.org/10.1038/s41598-022-10352-3.

Neuffer, J, R González-Domı́nguez, S Lefèvre-Arbogast, Low DY, B Driollet, C Helmer, A Du Preez, et al. 2022. “Exploration of the Gut-Brain Axis Through Metabolomics Identifies Serum Propionic Acid Associated with Higher Cognitive Decline in Older Persons.” Nutrients 14 (21). https://doi.org/10.3390/nu14214688.

Oliva, Meritxell, Manuel Muñoz-Aguirre, Sarah Kim-Hellmuth, Valentin Wucher, Ariel DH Gewirtz, Daniel J Cotter, Princy Parsana, et al. 2020. “The Impact of Sex on Gene Expression Across Human Tissues.” Science 369 (6509). https://doi.org/10.1126/science.aba3066.

Oriol-Tordera, B, M Berdasco, A Llano, B Mothe, C Gálvez, J Martinez-Picado, J Carrillo, et al. 2020. “Methylation Regulation of Antiviral Host Factors, Interferon Stimulated Genes (ISGs) and t-Cell Responses Associated with Natural HIV Control.” PLoS Pathogens, August. https://doi.org/10.1371/journal.ppat.1008678.

Oriol-Tordera, B, A Esteve-Codina, M Berdasco, M Rosás-Umbert, E Gonçalves, C Duran-Castells, F Català-Moll, et al. 2022. “Epigenetic Landscape in the Kick-and-Kill Therapeutic Vaccine BCN02 Clinical Trial Is Associated with Antiretroviral Treatment Interruption (ATI) Outcome.” EBioMedicine, April. https://doi.org/10.1016/j.ebiom.2022.103956.

Ounzain, Samir, Rudi Micheletti, Carme Arnan, Isabelle Plaisance, Dario Cecchi, Blanche Schroenc, Ferran Reverter, et al. 2015. “CARMEN, a Human Super Enhancer-Associated Long Noncoding RNA Controlling Cardiac Specification, Differentiation and Homeostasis.” Journal of Molecular and Cellular Cardiology, no. 89: 98–112. https://doi.org/10.1016/j.yjmcc.2015.09.016.

Palau-Rodriguez, Magali, Mar Garcia-Aloy, Antonio Miñarro, M. Rosa Bernal-Lopez, Carl Brunius, Ricardo Gómez-Huelgas, Rikard Landberg, Francisco J. Tinahones, and Cristina Andres-Lacueva. 2020. “Effects of a Long-Term Lifestyle Intervention on Metabolically Healthy Women with Obesity: Metabolite Profiles According to Weight Loss Response.” Clinical Nutrition 39 (1): 215–24. https://doi.org/10.1016/j.clnu.2019.01.018.

Palau-Rodriguez, Magali, Sara Tulipani, Anna Marco-Ramell, Antonio Miñarro, Olga Jauregui, Raul Gonzalez-Dominguez, Alex Sanchez-Pla, Bruno Ramos-Molina, Francisco J. Tinahones, and Cristina Andres-Lacueva. 2018. “Characterization of Metabolomic Profile Associated with Metabolic Improvement After Bariatric Surgery in Subjects with Morbid Obesity.” Journal of Proteome Research 17 (8): 2704–14. https://doi.org/10.1021/acs.jproteome.8b00144.

Palau-Rodriguez, M, A Marco-Ramell, P Casas-Agustench, S Tulipani, A Miñarro, A Sanchez-Pla, M Murri, Tinahones FJ, and C Andres-Lacueva. 2021. “Visceral Adipose Tissue Phospholipid Signature of Insulin Sensitivity and Obesity.” Journal of Proteome Research 20 (5): 2410–19. https://doi.org/10.1021/acs.jproteome.0c00918.

Palau-Rodriguez, M., S. Tulipani, A. Marco-Ramell, A. Miñarro, O. Jáuregui, A. Sanchez-Pla, B. Ramos-Molina, F. J. Tinahones, and C. Andres-Lacueva. 2018. “Metabotypes of Response to Bariatric Surgery Independent of the Magnitude of Weight Loss.” PloS One 13 (6): e0198214. https://doi.org/10.1371/journal.pone.0198214.

Palau-Rodrı́guez, M., M. Garcia-Aloy, M. Rosa Bernal-Lopez, R. Gómez-Huelgas, F. J. Tinahones, A. Miñarro, and C. Andrés-Lacueva. 2020. “Reply to the Letter to the Editor: Lifestyle Interventions on Weight Loss Among Metabolically Healthy Obese Women.” Clinical Nutrition 39 (9): 2933–34. https://doi.org/10.1016/j.clnu.2020.07.017.

Peron, G., G. Gargari, T. Meroño, A. Miñarro, E. V. Lozano, P. C. Escuder, R. González-Domı́nguez, et al. 2021. “Crosstalk Among Intestinal Barrier, Gut Microbiota and Serum Metabolome After a Polyphenol-Rich Diet in Older Subjects with "Leaky Gut": The MaPLE Trial.” Clinical Nutrition 40 (10): 5288–97. https://doi.org/10.1016/j.clnu.2021.08.027.

Peron, G., T. Meroño, G. Gargari, N. Hidalgo-Liberona, A. Miñarro, E. V. Lozano, P. Castellano-Escuder, et al. 2022. “A Polyphenol-Rich Diet Increases the Gut Microbiota Metabolite Indole 3-Propionic Acid in Older Adults with Preserved Kidney Function.” Molecular Nutrition and Food Research 66 (21). https://doi.org/10.1002/mnfr.202100349.

Rabassa, Montserrat, Raul Zamora‐Ros, Magalı́ Palau‐Rodriguez, Sara Tulipani, Antonio Miñarro, Stefania Bandinelli, Luigi Ferrucci, Antonio Cherubini, and Cristina Andres‐Lacueva. 2020. “Habitual Nut Exposure, Assessed by Dietary and Multiple Urinary Metabolomic Markers, and Cognitive Decline in Older Adults: The InCHIANTI Study.” Molecular Nutrition &Amp; Food Research 64 (2). https://doi.org/10.1002/mnfr.201900532.

Ramiro, L, T Garcı́a-Berrocoso, F Briansó, L Goicoechea, A Simats, V Llombart, R Gonzalo, et al. 2021. “Integrative Multi-Omics Analysis to Characterize Human Brain Ischemia.” Molecular Neurobiology, August. https://doi.org/10.1007/s12035-021-02401-1.

Reverter, F., and The GTEx Consortium. 2015. “The Genotype-Tissue Expression (GTEx) Pilot Analysis: Multitissue Gene Regulation in Humans.” Science 348 (6235): 648–60. https://doi.org/10.1126/science.1262110.

Reverter, F., E. Vegas, and J. M. Oller. 2014. “Kernel-PCA Data Integration with Enhanced Interpretability.” BMC Systems Biology 8(S2) (s6): 1–9. https://doi.org/10.1186/1752-0509-8-S2-S6.

———. 2018. “Kernel Conditional Embeddings for Associating Omic Data Types.” Lecture Notes in Computer Science 10813 LNBI: 501–10. https://doi.org/10.1007/978-3-319-78723-7_43.

Rı́os, D., M. Cubedo, and M. Rı́os. 2013. “Graphical Study of Reasons for Engagement in Physical Activity in European Union.” SpringerPlus 2 (1): 1–6. https://doi.org/10.1186/2193-1801-2-488.

Rı́os, M., J. M. Garcı́a, M. Cubedo, and D. Pérez. 1996. “Analysis of Temporary Series in the Epidemiology of Typhoid Fever in Spain,análisis de Series Temporales En La Epidemiologı́a de La Fiebre Tifoidea En España.” Medicina Clinica 106 (18): 686–89.

Rosado, Pilar, Rubén Fernández, and Ferran Reverter. 2021. “GANs and Artificial Facial Expressions in Synthetic Portraits.” Big Data and Cognitive Computing. https://doi.org/10.3390/bdcc5040063.

Rosado, P., and F. Reverter. 2020. “Vistas Panorámicas Sobre El Patrimonio Visual Colectivo a Través de Redes Neuronales Convolucionales. Las Exposiciones Revolutionary Arkive y Mnemosyne 2.0 de Pilar Rosado.” Artnodes, no. 26. https://doi.org/10.7238/a.v0i26.3354.

Rosado-Rodrigo, P., E. Figueras-Ferrer, F. Reverter-Comes, and M. Planas-Rosselló. 2016. “La Visión Artificial, Un Nuevo Aliado Para El análisis de Imágenes.” Arte, Individuo y Sociedad 28 (2): 339–54.

Rosado-Rodrigo, Pilar, Eva Figueras-Ferrer, Miquel Planas-Rossello, and Ferran Reverter-Comes. 2015. “Computer Vision, a New Ally for the Analysis of Artistic Images.” Arte, Individuo y Sociedad 28 (2): 325–38. https://doi.org/10.5209/rev_ARIS.2016.v28.n2.48802.

Rosado-Rodrigo, P., and F. Reverter. 2023. “The Art of the Masses: Overviews on the Collective Visual Heritage Through Convolutional Neural Networks.” Big Data and Cognitive Computing 7 (1). https://doi.org/10.3390/bdcc7010033.

Sánchez-Montalvá, A, D Álvarez-Sierra, M Martı́nez-Gallo, J Perurena-Prieto, I Arrese-Muñoz, Ruiz-Rodrı́guez JC, J Espinosa-Pereiro, P Bosch-Nicolau, and “Hospital Vall Group COVID-19 d’Hebron for the study of immune profile”. 2022. “Exposing and Overcoming Limitations of Clinical Laboratory Tests in COVID-19 by Adding Immunological Parameters; a Retrospective Cohort Analysis and Pilot Study.” Frontiers in Immunology. https://doi.org/10.3389/fimmu.2022.902837.

Sánchez-Montalvá, A, D Álvarez-Sierra, M Martı́nez-Gallo, J Perurena-Prieto, I Arrese-Muñoz, J Ruiz-Rodrı́guez, J Espinosa-Pereira, P Bosch-Nicolau, and Borrell RP. 2022. “Limited Performance of Biomarkers and Clinical Parameters in COVID–19: Improving Interpretation and Exploration of New Immunological Markers.” Preprints with THE LANCET. https://doi.org/10.2139/ssrn.4000586.

Sánchez-Pla, A., M. Salicrú, and J. Ocaña. 2019. “An Equivalence Approach to the Integrative Analysis of Feature Lists.” BMC Bioinformatics 20 (1). https://doi.org/10.1186/s12859-019-3008-x.

Santus, Luisa, Maria Sopena-Rios, Raquel Garcı́a-Pérez, Aaron E. Lin, Gordon C. Adams, Kayla G. Barnes, Katherine J. Siddle, et al. 2023. “Single-Cell Profiling of lncRNA Expression During Ebola Virus Infection in Rhesus Macaques.” Nature Communications 14 (3866). https://doi.org/10.1038/s41467-023-39627-7.

Sanz, Hector, Ferran Reverter, and Clarissa Valim. 2020. “Enhancing SVM for Survival Data Using Local Invariances and Weighting.” BMC Bioinformatics 21 (193). https://doi.org/10.1186/s12859-020-3481-2.

Sanz, H., C. Valim, E. Vegas, J. M. Oller, and F. Reverter. 2018. “SVM-RFE: Selection and Visualization of the Most Relevant Features Through Non-Linear Kernels.” BMC Bioinformatics 19: 432. https://doi.org/10.1186/s12859-018-2451-4.

Schuitemaker, J. B., L. A. López-Pantaleon, P. Tejada Pérez, M. Cubedo Culleré, A. P. Sánchez Cohen, A. T. Imbiscuso Esqueda, and J. Acosta Dı́ez. 2021. “Variación de La Baricidad En La Mezcla de Anestesia Espinal Para Cesárea, Tiene Algún Efecto En La Calidad Anestésica? Estudio Aleatorizado, Doble Ciego, Controlado.” Clı́nica e Investigación En Ginecologı́a y Obstetricia 48 (2): 95–103. https://doi.org/10.1016/j.gine.2020.08.001.

Schuitemaker R., J. B., X. Sala-Blanch, A. P. Sánchez Cohen, L. A. López-Pantaleon, J. T. Mayoral R., and M. Cubedo. 2019. “Eficacia Analgésica Del Bloqueo Pectoral Modificado más Bloqueo Del Plano Del Serrato En Mamoplastia Subpectoral: Ensayo Clı́nico, Controlado, Aleatorizado, Triple Ciego.” Revista Española de Anestesiologı́a y Reanimación 66 (2): 62–71. https://doi.org/10.1016/j.redar.2018.08.001.

Simats, A, L Ramiro, T Garcı́a-Berrocoso, F Briansó, R Gonzalo, L Martı́n, A Sabé, et al. 2020. “A Mouse Brain-Based Multi-Omics Integrative Approach Reveals Potential Blood Biomarkers for Ischemic Stroke.” Molecular & Cellular Proteomics : MCP, December. https://doi.org/10.1074/mcp.ra120.002283.

Torrallardona-Murphy, Orla, Juan M. Pericàs, Neus Rabaneda-Lombarte, Marta Cubedo, David Cucchiari, Júlia Calvo, Júlia Serralabós, et al. 2021. “Medicalized Hotel as an Alternative to Hospital Care for Management of Noncritical COVID-19.” Annals of Internal Medicine, June. https://doi.org/10.7326/m21-1873.

Torrents, Carlota, Marta Castañer, Ferran Reverter, Gaspar Morey, and Toni Jofre. 2015. “Dance Teachers’ Aesthetic Perception of Kinematic Parameters.” Psychology of Aesthetics, Creativity, and the Arts. https://doi.org/10.1037/a0039757.

Tor‐Roca, Alba, Alex Sánchez‐Pla, Aniko Korosi, Mercè Pallàs, Paul J. Lucassen, Pol Castellano‐Escuder, Ludwig Aigner, et al. 2023. “A Mediterranean Diet‐based Metabolomic Score and Cognitive Decline in Older Adults: A Case–Control Analysis Nested Within the Three‐city Cohort Study.” Molecular Nutrition & Food Research, October. https://doi.org/10.1002/mnfr.202300271.

Tulipani, Sara, Magali Palau-Rodriguez, Antonio Miñarro Alonso, Fernando Cardona, Anna Marco-Ramell, Bozo Zonja, Miren Lopez de Alda, et al. 2016. “Biomarkers of Morbid Obesity and Prediabetes by Metabolomic Profiling of Human Discordant Phenotypes.” Clinica Chimica Acta 463 (December): 53–61. https://doi.org/10.1016/j.cca.2016.10.005.

Tume, Pedro, Robert King, Elizabeth González, Guillermo Bustamante, Ferran Reverter, Nuria Roca, and Jaume Bech. 2014. “Trace Element Concentrations in Schoolyard Soils from the Port City of Talcahuano, Chile.” Journal of Geochemical Exploration 147: 229–36. https://doi.org/10.1016/j.gexplo.2014.08.014.

Unión-Caballero, Andrea, Tomás Meroño, Raúl Zamora-Ros, Agnetha Linn Rostgaard-Hansen, Antonio Miñarro, Alex Sánchez-Pla, Núria Estanyol-Torres, et al. 2024. “Metabolome Biomarkers Linking Dietary Fibre Intake with Cardiometabolic Effects: Results from the Danish Diet, Cancer and Health-Next Generations MAX Study.” Food and Function 15 (3): 1643–54. https://doi.org/10.1039/d3fo04763f.

Urpi-Sarda, M., E. Almanza-Aguilera, R. Llorach, R. Vázquez-Fresno, R. Estruch, D. Corella, J. V. Sorli, et al. 2019. “Non-Targeted Metabolomic Biomarkers and Metabotypes of Type 2 Diabetes: A Cross-Sectional Study of PREDIMED Trial Participants.” Diabetes & Metabolism 45 (2): 167–74. https://doi.org/10.1016/j.diabet.2018.02.006.

Vegas, E., J. M. Oller, and F. Reverter. 2016. “Inferring Differentially Expressed Pathways Using Kernel Maximum Mean Discrepancy-Based Test.” BMC Bioinformatics 17 (s5): 399–405. https://doi.org/10.1186/s12859-016-1046-1.