Marlétaz, F.; Firbas, PN.; Maeso, I.; Tena, JJ.; Bogdanovic, O.; Perry, M.; Wyatt, CDR.; de la Calle-Mustienes, E.; Bertrand, S.; Burguera, D.; Acemel, RD.; van Heeringen, SJ.; Naranjo, S.; Herrera-Ubeda, C.; Skvortsova, K.; Jimenez-Gancedo, S.; Aldea, D.; Marquez, Y.; Buono, L.; Kozmikova, I.; Permanyer, J.; Louis, A.; Albuixech-Crespo, B.; Le Petillon, Y.; Leon, A.; Subirana, L.; Balwierz, PJ.; Duckett, PE.; Farahani, E.; Aury, JM.; Mangenot, S.; Wincker, P.; Albalat, R.; Benito-Gutiérrez, È.; Cañestro, C.; Castro, F.; D'Aniello, S.; Ferrier, DEK.; Huang, S.; Laudet, V.; Marais, GAB.; Pontarotti, P.; Schubert, M.; Seitz, H.; Somorjai, I.; Takahashi, T.; Mirabeau, O.; Xu, A.; Yu, JK.; Carninci, P.; Martinez-Morales, JR.; Crollius, HR.; Kozmik, Z.; Weirauch, MT.; Garcia-Fernàndez, J.; Lister, R.; Lenhard, B.; Holland, PWH.; Escriva, H.; Gómez-Skarmeta, JL.; Irimia, M. (2018). Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature, 564, pp. 64 - 70 . https://doi.org/10.1038/s41586-018-0734-6 . ISSN: 0028-0836
Albuixech-Crespo B.; López-Blanch L.; Burguera D.; Maeso I.; Sánchez-Arrones L.; Moreno-Bravo JA.; Somorjai I.; Pascual-Anaya J.; Puelles E.; Bovolenta P.; Garcia-Fernàndez J.; Puelles L.; Irimia M.; Ferran JL. (2017). Molecular regionalization of the developing amphioxus neural tube challenges major partitions of the vertebrate brain. PLoS Biology, 15(4), p. e2001573 . Institutional Repository . ISSN: 1544-9173
Burguera D.; Marquez Y.; Racioppi C.; Permanyer J.; Torres-Méndez A.; Esposito R.; Albuixech-Crespo B.; Fanlo L.; D'Agostino Y.; Gohr A.; Navas-Perez E.; Riesgo A.; Cuomo C.; Benvenuto G.; Christiaen LA.; Martí E.; D'Aniello S.; Spagnuolo A.; Ristoratore F.; Arnone MI.; Garcia-Fernàndez J.; Irimia M. (2017). Evolutionary recruitment of flexible Esrp-dependent splicing programs into diverse embryonic morphogenetic processes. Nature Communications, 8(1), p. 1799 . Institutional Repository . ISSN: 2041-1723
Somorjai, I.; Somorjai, R.; García-Fernàndez, J.; Escrivà, E. (2012). Vertebrate-like regeneration in the invertebrate chordate amphioxus. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 108, pp. 14186 - 14191 . ISSN: 0027-8424
Maeso, I.; Irimia, M.; Tena, J.J.;, González-Pérez, E.; Tran, D.; Ravi, V.; Venkatesh, B.; Campuzano, S.; Gómez-Skarmeta, J.L.; García-Fernàndez, J. (2012). An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement. Genome Research, 22, pp. 642 - 655 . ISSN: 1088-9051
López-Doménech, G.; Serrat, R.; Mirra, S.; D’Aniello, S.; Somorjai, I.; Abad, A.; Vitureira, N.; García-Arumí, E.; Alonso, M.T.; Rodriguez-Prados, M.; Burgaya, F.; L. Andreu, A.; García-Sancho, J.; Trullas, R.; García-Fernàndez, J.; Soriano, E. (2012).The Eutherian Armcx genes regulate mitochondrial trafficking in neurons and interact with Miro and Trak2. Nature Communications . https://doi.org/10.1038/ncomms1829 . ISSN: 2041-1723
Irimia, M.; Royo JL; Burguera D; Maeso I; Gómez-Skarmeta, JL; García-Fernàndez, J (2012). Comparative genomics of Hedgehog loci in chordates and the origin of Shh regulatory novelties. Scientific Reports, 2(433) . Institutional Repository . ISSN: 2045-2322
Irimia, M.; Denuc, A.; Burguera, D.; Somorjai, I.; Martín-Durán, J.; Genikovich, G.; Jiménez-Delgado, S.; Technau, U.; Roy, S.; Marfany, G.; Garcia-Fernàndez, J. (2011). Stepwise assembly of the nova-regulated alternative splicing network in the vertebrate brain. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 108, pp. 5319 - 5324 . ISSN: 0027-8424
Royo, J.L.; Maeso, I.; Irimia, M.; Gao, F.; Peter, I.S.; Lopes, C.S.; D'Aniello, S.; Casares, F.; Davidson, E.H.; Garcia-Fernández, J.; Gómez-Skarmeta, J.L. (2011). Transphyletic conservation of developmental regulatory state in animal evolution. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 108, pp. 14186 - 14191 . ISSN: 0027-8424
Garcia-Fernández, J.; Benito-Gutiérrez, E. (2009). It's a long way from amphioxus: descendants of the earliest chordate. BioEssays, 31(6), pp. 665 - 667 . ISSN: 0265-9247
Putnam, N.; Butts, T.; Ferrier, D.E.K.; Furlong, R.F.; Hellsten, U.; Kawashima, T.; Robinson-Rechavi, M.; Shoguchi, E.; Terry, A.; Yu, J.K.; Benito-Gutiérrez, E.; Dubchak, I.; Garcia-Fernàndez, J.; Grigoriev, I.V.; Horton, A.V.; de Jong, P.J.; Jurka, J.; Kapitonov, V.; Kohara, Y.; Kuroki, Y.; Lindquist, E.; Lucas, S.; Osoegawa, K.; Pennachio, L.A.; Asaf Salamov, A.; Satou, Y.; Sauka-Spengler, T.; Schmutz, T.; Shin-I, T.; Toyoda, A.; Gibson-Brown, J.J.; Bronner-Fraser, M.; Fujiyama, M.; Holland, L.Z.; Holland, P.W.H.; Satoh, N.; Rokhsar, D.S. (2008). The amphiouxs genome and the evolution of the chordate karyotype. Nature, 453, pp. 1064 - 1071 . ISSN: 0028-0836
Garcia-Fernàndez, J. (2005). The genesis and evolution of homeobox gene clusters. Nature Reviews Genetics, 6, pp. 881 - 892 . ISSN: 1471-0056
Brooke, N.M.; Garcia-Fernandez, J.; Holland, P.W.H. (1998). The ParaHox gene cluster is an evolutionary sister of the Hox gene cluster. Nature, 392, pp. 920 - 922 . ISSN: 0028-0836
Holland, P.W.H.; García Fernández, J. (1994). Archetypal organization of the amphioxus Hox gene cluster. Nature, 370, pp. 563 - 566 . ISSN: 0028-0836
García-Fernández, J.; Marfany, G.; Baguñà, J.; Saló, E. (1993). Infiltration of mariner elements. Nature, 364(8), pp. 109 - 110 . ISSN: 0028-0836