2024→2020

• Corominas, M. et al. 2024. The Catalan initiative for the Earth BioGenome Project: contributing local data to global biodiversity genomics. NAR Genomics and Bioinformatics 6: lqae075. doi: 10.1093/nargab/lqae075.

• Escuer, P., Guirao-Rico, S., Arnedo, M. A., Sánchez-Gracia, A., Rozas, J. 2024. Population genomics of adaptive radiations: Exceptionally high levels of genetic diversity and recombination in an endemic spider from the Canary Islands. Mol. Ecol. (in press) XX: XXX. doi: 10.1111/mec.17547.

• Pisarenco, V. A., Vizueta, J., Rozas, J. 2024. GALEON: a comprehensive bioinformatic tool to analyse and visualize gene clusters in complete genomes. Bioinformatics 40: btae439. doi:10.1093/bioinformatics/btae439.

• Rondón, J. J., Pisarenco, V. A., Pardos-Blas, J. R., Sánchez-Gracia, A., Zardoya, R., Rozas, J. 2024. Comparative genomic analysis of chemosensory-related gene families in gastropods. Molecular Phylogenet. Evol. 192: 107986. doi:10.1016/j.ympev.2023.107986.

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• Ferrer Obiol, J., Herranz, J. M., Paris, J. R., Whiting, J. R., Rozas, J., Riutort, M., González-Solís, J. 2023. Species delimitation using genomic data to resolve taxonomic uncertainties in a speciation continuum of pelagic seabirds. Mol. Phylogenet. Evol. 179: 107671. doi:10.1016/j.ympev.2022.107671.

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• Arnedo, M. A., Rozas J. 2022. Genòmica de quelicerats: la desconstrucció dels aràcnids i la base genòmica de la seda, els verins i altres trets de rellevància biològica. Treballs de la Societat Catalana de Biologia 72: 34-42. doi: 10.2436/20.1501.02.215.

• Cuevas-Caballé, C., Ferrer Obiol, J., Vizueta, J., Genovart, M., González-Solís, J., Riutort, M., Rozas, J. 2022. The genome of the Balearic shearwater (Puffinus mauretanicus), a Critically Endangered seabird: a valuable resource for evolutionary and conservation genomics. Genome Biol. Evol. 14:. 1-14. doi: 10.1093/gbe/evac067.

• Escuer, P., Pisarenco, V. A., Fernández-Ruiz, A. A., Vizueta, A. J, Sánchez-Herrero, J. F., Arnedo, M. A., Sánchez-Gracia, A., Rozas, J. 2022. The chromosome-scale assembly of the Canary Islands endemic spider Dysdera silvatica (Arachnida, Araneae) sheds light on the origin and genome structure of chemoreceptor gene families in chelicerates. Mol. Ecol. Res. 22: 375-390. doi: 10.1111/1755-0998.13471.

• Ferrer Obiol, J., James, H. F., Chesser, R. T., Bretagnolle, V., González-Solís, J., Rozas, J., Welch, A. J. Riutort, M. 2022. Palaeoceanographic changes in the late Pliocene promoted rapid diversification in pelagic seabirds. J. Biogeography 49: 171-188. doi: 10.1111/jbi.14291.

• Librado, P., Rozas, J. 2022. Reconstructing gene gains and losses with BadiRate. Pp. 2134-232. In Luo, H. (ed.) Environmental Microbial Evolution: Methods and Protocols; Methods in Molecular Biology Series Vol. 2569. Humana Press, NJ, USA.

• Rondón, J. J., Moreyra, N. N., Pisarenco, V. A., Rozas, J., Hurtado, J., Hasson, E. 2022. Evolution of the odorant-binding protein gene family in Drosophila. Frontiers in Ecol. Evol. 10: 957247. doi: 10.3389/fevo.2022.957247.

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• Adrián-Serrano, S., Lozano-Fernández, J., Pons, J., Rozas, J., Arnedo, M. A. 2021. On the shoulder of giants: Mitogenome recovery from nontargeted genome projects for phylogenetic inference and molecular evolution studies. J. Zool. Syst. Evol. Res. 59: 5-30. doi: 10.1111/jzs.12415.

• Balart, P., Cieslak, A., Escuer, P., Rozas, J., Ribera, I., Fernández, R. 2021. Smelling in the dark: phylogenomic insights on the chemosensory system of a subterranean beetle. Mol. Ecol. 30: 2573-2590. doi: 10.1111/mec.15921.

• Cerca, J., Armstrong, E.A., Vizueta, J., Fernández, R., Dimitrov, D., Petersen, B., Prost, S., Rozas, J., Petrov, P., Gillespie, R.G. 2021. The Tetragnatha kauaiensis genome sheds light on the origins of genomic novelty in spiders. Genome Biol. Evol. 13: 1-17. doi: 10.1093/gbe/evab262.

• Ferrer Obiol, J., James, H. F., Chesser, R. T., Bretagnolle, V., González-Solís, J., Rozas, J., Riutort, M., Welch, A. J. 2021. Integrating Sequence Capture and Restriction Site-Associated DNA Sequencing to Resolve Recent Radiations of Pelagic Seabirds. Syst. Biol. 70: 976-996. doi: 10.1093/sysbio/syaa101.

• Recuerda, M., Vizueta, J., Cuevas-Caballé, C., Blanco, G., Rozas, J., Milá, B. 2021. Chromosome-level genome assembly of the common chaffinch (Aves: Fringilla coelebs): a valuable resource for evolutionary biology. Genome Biol. Evol. 13: 1-12. doi: 10.1093/gbe/evab034.

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• Almudi, I., et al. 2020. Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings. Nature Commun. 11: 2631. doi: 10.1038/s41467-020-16284-8.

• Clifton, B. D. et al. 2020. Understanding the early evolutionary stages of a tandem D. melanogaster-specific gene family: a structural and functional population study. Mol. Biol. Evol. 37: 2584-2600. doi: 10.1093/molbev/msaa109.

• Feng, S. et al. 2020. Dense sampling of bird diversity increases power of comparative genomics. Nature 587: 252-257. doi: 10.1038/s41586-020-2873-9.

• Hinojosa-Alvarez, S., Arias-Montes, S., Ferrand, S. Purugganan, M. D., Rozas, J., Rosas, U., Wegier, A. 2020. The chloroplast genome of the pincushion cactus (Mammilllaria haageana subsp. san-angelensis), a Mexican endangered species. Mitochondrial DNA Part B 5: 2038-2039. doi: 10.1080/23802359.2020.1757523.

• Leria, L., Vila-Farré, M., Alvarez-Presas, M., Sánchez-Gracia, A., Rozas, J., Sluys, R., Riutort, M. 2020. Cryptic species delineation in freshwater planarians of the genus Dugesia (Platyhelminthes, Tricladida): Extreme intraindividual genetic diversity, morphological stasis, and karyological variability. Mol. Phyl. Evol. 143: 106496. doi: 10.1016/j.ympev.2019.05.010.

• Rispe, C. et al. 2020. The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. BMC Biol. 18: 90. doi: 10.1186/s12915-020-00820-5.

• Vizueta, J., Escuer, P., Frías-López, C., Guirao-Rico, S., Hering, L., Mayer, G., Rozas, J., Sánchez-Gracia, A. 2020. Evolutionary history of major chemosensory gene families across Panarthropoda. Mol. Biol. Evol. 37: 3601-3615. doi: 10.1093/molbev/msaa197.

• Vizueta, J., Escuer, P., Sánchez-Gracia, A., Rozas, J., 2020. Genome mining and sequence analysis of chemosensory soluble proteins in arthropods. In Pelosi, P. and Knoll, W. (eds.). Odorant Binding and Chemosensory Proteins; Methods in Enzymology, Vol. 642. Pp. 1-20. Elsevier Inc. doi: 10.1016/bs.mie.2020.05.015.

• Vizueta, J., Sánchez-Gracia, A., Rozas, J. 2020. BITACORA: A comprehensive tool for the identification and annotation of gene families in genome assemblies. Mol. Ecol. Res. 20:1445-1452. doi: 10.1111/1755-0998.13202.

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2019→2010

• Bernabeu, M., Sánchez-Herrero, J. F.; Huedo, P.; Prieto, A.; Hüttener, M.; Rozas, J.; Juárez, A. 2019. Gene duplications in the E. coli genome: common themes among pathotypes. BMC Genomics 20: 313. doi: 10.1186/s12864-019-5683-4.

• Rendón-Anaya, M. et al. 2019. The Avocado Genome Informs Deep Angiosperm Phylogeny, Highlights Introgressive Hybridization, and Reveals Pathogen-Influenced Gene Space Adaptation. Proc. Natl. Acad. Sci. USA. 116: 17081-17089. doi: 10.1101/654285.

• Sánchez-Herrero, J. F., Frías-López, C., Escuer, P., Hinojosa-Alvarez, S., Arnedo, M. A., Sánchez-Gracia, A., Rozas, J. 2019. The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates. GigaScience 8: 1-9. doi: 10.1093/gigascience/giz099.

• Vizueta, J., Macías-Hernández, N., Arnedo, M. A., Rozas, J. Sánchez-Gracia, A. 2019. Chance and predictability in evolution: the genomic basis of convergent dietary specializations in an adaptive radiation. Mol. Ecol. 28: 4028-4045. doi: 10.1111/mec.15199.

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• Vizueta, J., Rozas, J., Sánchez-Gracia, A. 2018. Comparative Genomics Reveals Thousands of Novel Chemosensory Genes and Massive Changes in Chemoreceptor Repertories across Chelicerates Genome Biol. Evol. 10: 1221-1236. doi:10.1093/gbe/evy081.

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• Clifton, B. D. et al. 2017. Rapid Functional And Sequence Differentiation of a Tandemly-Repeated Species-Specific Multigene Family in Drosophila. Mol. Biol. Evol. 34: 51-65. doi: 10.1093/molbev/msw212.

• Fukushima, K. et al. 2017. The pitcher plant Cephalotus genome reveals genetic changes associated with carnivory. Nature Ecol. Evol. 1: 0059. doi: 10.1038/s41559-016-0059.

• Rozas, J., Ferrer-Mata, A., Sánchez-DelBarrio, J.C., Guirao-Rico, S., Librado, P., Ramos-Onsins, S.E., Sánchez-Gracia, A. 2017. DnaSP 6: DNA Sequence Polymorphism Analysis of Large Datasets. Mol. Biol. Evol. 34: 3299-3302. doi: 10.1093/molbev/msx248.

• Sánchez-Gracia, A., Guirao-Rico, S., Hinojosa, S., Rozas, J. 2017. Computational prediction of the phenotypic effects of genetic variants: Basic concepts and some application examples in Drosophila nervous system genes. J. Neurogenetics 31: 307-319. doi: 10.1080/01677063.2017.1398241.

• Vizueta, J., Frías-López, C., Macías-Hernández, N., Arnedo, M. A., Sánchez-Gracia, A. and Rozas, J. 2017. Evolution of chemosensory gene families in arthropods: Insight from the first inclusive comparative transcriptome analysis across spider appendages. Genome Biol. Evol. 9: 178-196. doi:10.1093/gbe/evw296.

• Zardoya, R., Sánchez-Gracia, A. and Rozas, J. 2017. Filogenómica y genómica de la adaptación. Revista de la SEBBM 194: 9-14.

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• Donaire, L., Rozas, J. and Ayllón, M. A. 2016. Molecular characterization of Botrytis ourmia-like virus, a mycovirus close to the plant pathogenic genus Ourmiavirus. Virology 489: 158-164. doi: 10.1016/j.virol.2015.11.027.

• Frías-López, C., Sánchez-Herrero, J. F., Guirao-Rico, S., Mora, E., Arnedo, M. A., Sánchez-Gracia, A. and Rozas, J. 2016. DOMINO: Development of informative molecular markers for phylogenetic and genome-wide population genetic studies in non-model organisms. Bioinformatics 32: 3753-3759. doi:10.1093/bioinformatics/btw534.

• Gulia-Nuss, M. et al. 2016. Genomic insights into the Ixodes scapularis tick vector of Lyme disease. Nature Commun. 7: 10057. doi: 10.1038/ncomms10507.

• Kanost, M. R. et al. 2016. Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta. Insect Biochemistry and Molecular Biololgy 76: 118-147. doi: 10.1016/j.ibmb.2016.07.005.

• Librado, P. and Rozas, J. 2016. Weak polygenic selection drives the rapid adaptation of the Drosophila chemosensory system: lessons from the upstream regions of the major gene families. Genome Biol. Evol. 8: 2493-2504. doi: 10.1093/gbe/evw191.

• Torres-Oliva, M., Almeida, F. C., Sánchez-Gracia, A. and Rozas, J. 2016. Comparative genomics uncovers unique gene turnover and evolutionary rates in a gene family involved in the detection of insect cuticular pheromones. Genome Biol. Evol. 8: 1734-1747. doi:10.1093/gbe/evw108.

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• Almeida, F. C., Sánchez-Gracia, A., Walden, K. K. O., Robertson, H. M., Rozas, J. 2015. Positive selection in extracellular domains in the diversification of Strigamia maritima chemoreceptors Frontiers Ecol. Evol. 3: 79. doi: 10.3389/fevo.2015.00079.

• Blanco, I. et al. 2015. Assessing Associations between the AURKA-HMMR-TPX2-TUBG1 Functional Module and Breast Cancer Risk in BRCA1/2 Mutation Carriers. PLoS ONE 10: e0120020. doi: 10.1371/journal.pone.0120020.

• Carretero-Paulet, L., Chang, T.-H., Librado, P., Ibarra-Laclette, E., Herrera-Estrella, L., Rozas, J. and Albert, V. A. 2015. Genome-wide analysis of adaptive molecular evolution in the carnivorous plant Utricularia gibba. Genome Biol. Evol. 7: 444-456.

• Carretero-Paulet, L., Librado, P., Chang, T.-H., Ibarra-Laclette, E., Herrera-Estrella, L., Rozas, J. and Albert, V. A. 2015. High Gene Family Turnover Rates and Gene Space Adaptation in the Compact Genome of the Carnivorous Plant Utricularia gibba. Mol. Biol. Evol. 32: 1284-1295.

• Frías-López, C., Almeida, F. C., Guirao-Rico, S., Vizueta, J., Sánchez-Gracia, A., Arnedo, M. A., Rozas, J. 2015. Comparative analysis of tissue-specific transcriptomes in the funnel-web spider Macrothele calpeiana (Araneae, Hexathelidae) PeerJ 3: e1064. doi: 10.7717/peerj.1064.

• Kornobis, E., Cabellos, L., Aguilar, F., Frías-López, C., Rozas, J., Marco, J. and Zardoya, R. 2015. TRUFA: A User-Friendly Web Server for de novo RNA-seq Analysis Using Cluster Computing. Evolutionary Bioinformatics. 11: 97-104.

• Romero-Hernández, B., Tedim, A. P., Sánchez-Herrero, J. F., Librado, P., Rozas, J., Muñoz, G., Baquero, F., Cantón, R., Campo, R. D. 2015. Streptococcus gallolyticus subsp. gallolyticus from Human and Animal Origins: Genetic Diversity, Antimicrobial Susceptibility, and Characterization of a Vancomycin-Resistant Calf Isolate Carrying a VanA-Tn1546-Like Element. Antimicrob. Agents Chemother. 59: 2006-2015.

• Solà, E., Alvarez-Presas, M., Frías-López, C., Littlewood, T. J., Rozas, J., Riutort, M. 2015. Evolutionary Analysis of Mitogenomes from Parasitic and Free-Living Flatworms. PLoS ONE 10: e0120081. doi: 10.1371/journal.pone.0120081.

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• Almeida, F. C., Sánchez-Gracia, A., Campos, J. L. and Rozas, J. 2014. Family Size Evolution in Drosophila Chemosensory Gene Families: A Comparative Analysis with a Critical Appraisal of Methods. Genome Biol. Evol. 6: 1669-1682.

• Alvarez-Presas, M., Sánchez-Gracia, A., Carbayo, F., Rozas, J. and Riutort, M. 2014. Insights into the origin and distribution of biodiversity in the Brazilian Atlantic forest hotspot: A statistical phylogeographic study using a low-dispersal organism. Heredity 112: 656-665.

• Chipman, A. D. et al. 2014. The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima. PLoS Biol. 12: e1002005.

• Denoeud, F. et al. 2014. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science 345: 1181-1184.

• Librado, P., Vieira, F. G., Sánchez-Gracia, A., Kolokotronis, S.-O. and Rozas, J. 2014. Mycobacterial Phylogenomics: An Enhanced Method for Gene Turnover Analysis Reveals Uneven Levels of Gene Gain and Loss among Species and Gene Families. Genome Biol. Evol. 6: 1454-1465.

• Rozas, J. and Sánchez-Gracia, A. 2014. Analysis of Genetic Variation and Intraespecific Phylogenies. In The tree of life. Chapter 55, Pp. 663-673. P. Vargas and R. Zardoya (eds.). Sinauer Ass. Inc.

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• Alvarez-Ponce, D., Aguadé, M. and Rozas, J. 2013. Comment on: 'The Molecular Evolutionary Patterns of the Insulin/FOXO Signaling Pathway. Evol. Bioinformatics 9: 229-234.

• Librado, P. and Rozas, J. 2013. Uncovering the Functional Constraints Underlying the Genomic Organization of the Odorant-Binding Protein Genes. Genome Biol. Evol. 5: 2096-2108.  

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• Alvarez-Ponce, D., Guirao-Rico, S., Orengo, D. J., Segarra, C., Rozas, J. and Aguadé, M. 2012. Molecular population genetics of the insulin/TOR signal transduction pathway: A network-level analysis  in Drosophila melanogaster. Mol. Biol. Evol. 29: 123-132.

• Eirín-López, J. M., Rebordinos, L., Rooney, A. P. and Rozas, J. 2012. The birth-and-death evolution of multigene families revisited. Pp. 170-196. In Garrido-Ramos, M. A. (ed.). Repetitive DNA. Genome Dynamics, Vol. 7. Karger Pub. Basel.

• Librado, P., Vieira, F. G. and Rozas, J. 2012. BadiRate: Estimating Family Turnover Rates by Likelihood-Based Methods. Bioinformatics 28:279-281.

• Mackay, T. F. C. et al. 2012. The Drosophila melanogaster Genetic Reference Panel. Nature 482: 173-178.

• Ramia, M., Librado, P., Casillas, S., Rozas, J. and Barbadilla, A.  2012. PopDrowser: the Population Drosophila Browser. Bioinformatics 28: 595-596.

• Rozas, J. 2012. Análisis de la variabilidad genética y filogenias intraespecíficas. Pp. 553-561. In Vargas, P. and Zardoya, R. (eds.). El árbol de la vida: sistemática y evolución de los seres vivos. P. Vargas and R. Zardoya (eds.). Madrid.

• Vieira, F. G., Forêt, S., He, X., Rozas, J. and Field, L. M. 2012. Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses. PLoS ONE 7: e43034. doi:10.1371/journal.pone.0043034.

• Yeh, S.-D., Do, T., Chan, C., Cordova, A., Carranza, F., Yamamoto, E. A., Abbassi, M., Gandasetiawan, K. A., Librado, P., Damia, E., Dimitri, P., Rozas, J., Hartl, D. L. Roote J. and Ranz, J. M. 2012. Functional evidence that a recently evolved Drosophila sperm-specific gene boosts sperm competition. Proc. Natl. Acad. Sci. USA. 109: 2043-2048.

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• Alvarez-Ponce, D., Aguadé, M. and Rozas, J. 2011. Comparative genomics of the vertebrate insulin/TOR signal transduction pathway: A network-level analysis of selective pressures. Genome Biol. Evol. 3: 87-101.

• Alvarez-Presas, M., Carbayo, F., Rozas, J. and Riutort, M. 2011. Land planarians (Platyhelminthes) as a model organism for fine-scale phylogeographic studies: Understanding patterns of biodiversity in the Brazilian Atlantic Forest hotspot. J. Evol. Biol. 24: 887-896.

• Sánchez-Gracia, A. and Rozas, J. 2011. Molecular population genetics of the Odorant-Binding Protein 83 genomic region in Drosophila subobscura and D. guanche: Contrasting the effects of natural selection and gene arrangement expansion in the patterns of nucleotide variation. Heredity 106: 191-201.

• Sánchez-Gracia, A., Almeida, F. C. and Rozas, J.  2011. Comparative Genomics of the Major Chemosensory Gene Families in Arthropods. In Encyclopedia of Life Sciences (ELS). John Wiley & Sons, Ltd: Chichester.

• Vieira, F. G. and Rozas, J. 2011. Comparative genomics of the Odorant-Binding and Chemosensory Protein gene families across the Arthropoda: Origin and evolutionary history of the chemosensory system Genome Biol. Evol. 3: 476-490.

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• Alvarez-Presas, M., Carbayo, F., Rozas, J. and Riutort, M. 2010. Planarias terrestres, Mata Atlántica y biodiversidad. Quercus 291: 80-81.

• Carbayo, F., Alvarez-Presas, M., Rozas, J. and Riutort, M. 2010. Planárias terrestres: modelo de estudo para a proteção da mata atlântica no corredor da serra do Mar. Ciência Hoje 45 (267): 44-49.

• Kirkness, E. F. et al. 2010. Genome sequences of the human body louse and its primary endosymbiont provides insights into the permanent parasitic lifestyle. Proc. Natl. Acad. Sci. USA. 107: 12168-12173.

• Pérez-Alquicira, J., Martínez-Meyer, E., Molina-Freaner, F. E., Piñero, D., Rozas, J., Weller, S. G. and Domínguez, C. A. 2010. The role of historical factors and natural selection in the evolution of breeding systems of Oxalis alpina in the Sonoran desert “Sky Islands”. J. Evol. Biol. 23: 2163-2175.

• Richards, S. et al. The International Aphid Genomics Consortium. 2010. Genome Sequence of the Pea Aphid Acyrthosiphon pisum. PLoS Biol. 8: e1000313.

• Rozas, J. 2010. In La teoria de l'evolució 150 anys després, Institut Municipal de Barcelona i Museu de Ciències Naturals de Barcelona, Barcelona.

• Sánchez-Gracia, A. Romero-Pozuelo, J. and Ferrús, A. 2010. Two frequenins in Drosophila: unveiling the evolutionary history of an unusual neuronal calcium sensor (NCS) duplication. BMC Evol. Biol. 10: 1.

• Zhou, J.-J., Vieira, F. G., He, X.-L., Smadja, C., Liu, R., Rozas, J. and Field, L. M. 2010. Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum. Insect Mol. Biol. 19 (Suppl. 2): 113-122.

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2009→2001

• Alvarez-Ponce, D., Aguadé, M. and Rozas, J. 2009. Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes. Genome Res. 19: 234-242.

• Librado, P. and Rozas, J. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.

• Rozas, J. 2009. Bioinformática y Evolución Molecular. Ambiociencias Dic-2009: 92-96.

• Rozas, J. 2009. DNA Sequence Polymorphism Analysis using DnaSP. Pp. 337-350. In Posada, D. (ed.) Bioinformatics for DNA Sequence Analysis; Methods in Molecular Biology Series Vol. 537. Humana Press, NJ, USA.

• Rozas, J., Sánchez-Gracia, A. and Vieira, F. G. 2009. Evolución molecular y adaptación en las familias multigénicas del sistema quimiorreceptor de los insectos. Pp. 41-49. In Dopazo, H. and Navarro, A. (eds). Evolución y Adaptación. 150 años después del Origen de las Especies. Sociedad Española de Biología Evolutiva.

• Sánchez-Gracia, A., Vieira, F. G. and Rozas, J. 2009. Molecular evolution of the major chemosensory gene families in insects. Heredity 103: 208-216.

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• Andrés, O., Kellermann, T., López-Giráldez, F., Rozas, J., Domingo-Roura X. and Bosch, M. 2008. RPS4Y gene family evolution in primates. BMC Evol. Biol. 8: 142.

• Ramirez-Soriano, A., Ramos-Onsins, S. E., Rozas, J., Calafell, F. and Navarro, A. 2008. Statistical Power Analysis of Neutrality Tests Under Demographic Expansions, Contractions and Bottlenecks With Recombination. Genetics 179: 555-567.

• Sánchez-Gracia, A. and Rozas, J. 2008. Divergent evolution and molecular adaptation in the Drosophila Odorant-Binding Protein family: Inferences from the sequence variation at the OS-E and OS-F genes. BMC Evol. Biol. 8: 323.

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• Clark, A. G. et al. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.

• Sánchez-Gracia, A. and  Rozas, J. 2007. Unusual pattern of nucleotide sequence variation at the OS-E and OS-F genomic regions of Drosophila simulans. Genetics 175: 1923-1935.

• Vieira, F. G., Sánchez-Gracia, A. and Rozas, J. 2007. Comparative genomic analysis of the Odorant-Binding Protein family in 12 Drosophila genomes: Purifying selection and birth-and-death evolution. Genome Biol. 8: R235.

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• Hutter, S., A. J. Vilella and J. Rozas. 2006. Genome-Wide DNA Polymorphism Analyses using VariScan. BMC Bioinformatics 7: 409.

• Ojeda, A., Rozas, J. Folch, J. M. and Perez-Enciso, M. 2006. Unexpected high polymorphism at FABP4 gene unveils a complex history for pig populations. Genetics 174: 2119-2127.

• Quesada, H., S. E. Ramos-Onsins, J. Rozas and M. Aguadé. 2006. Positive Selection Versus Demography: Evolutionary Inferences Based on an Unusual Haplotype Structure in Drosophila simulans. Mol. Bio. Evol. 23: 1643-1647.

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• Munté, A., Rozas, J., Aguadé, M. and Segarra, C. 2005. Chromosomal inversion polymorphism leads to extensive genetic structure: a multilocus survey in Drosophila subobscura. Genetics 169: 1573-1581.

• Sánchez-Gracia, A., Maside, X. and Charlesworth, B. 2005. High rate of horizontal transfer of transposable elements in Drosophila. Trends in Genetics 21: 200-203.

• Vilella, A. J., Blanco-García, A., Hutter, S. and Rozas, J. 2005. VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data. Bioinformatics 21: 2791-2793.

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• Aguadé, M., Rozas, J. and Segarra, C. 2004. Inferring the action of natural selection from DNA sequence comparisons: data from Drosophila. Pp. 11-19 in Moya, A. and Font, E. (eds.) Evolution: from Molecules to Ecosystems. Oxford Univ. Press.

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• Sánchez-Gracia, A., Aguadé, M. and Rozas, J. 2003. Patterns of Nucleotide Polymorphism and Divergence in the Odorant-Binding Protein Genes OS-E and OS-F: Analysis in the Melanogaster Species Subgroup of Drosophila. Genetics 165: 1279-1288.

• Rozas, J., Sánchez-DelBarrio, J. C., Messeguer, X. and Rozas, R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.

• Quesada, H., ramírez, U. E. M., Rozas, J. and Aguadé, M. 2003. Large-Scale Adaptive Hitchhiking upon High Recombination. Genetics 165: 895-900.

• Pérez, J. A., Munté, A. Rozas, J., Segarra, C. and Aguadé, M. 2003. Nucleotide polymorphism in the RpII215 gene region of the insular species Drosophila guanche: reduced efficacy of weak selection on synonymous variation. Mol. Biol. Evol. 20: 1867-1875.

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• Ramos-Onsins, S. E. and Rozas, J. 2002. Statistical properties of new neutrality tests against population growth. Mol. Biol. Evol. 19: 2092-2100. (Article in PDF-format; 921 KB).

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• Rozas,  J., M.Gullaud, G. Blandin and M. Aguadé. 2001. DNA variation at the rp49 gene region of Drosophila simulans: Evolutionary inferences from an unusual haplotype structure. Genetics 158: 1147-1155. (Article in PDF-format; 234 KB).

• Khadem, M., J. Rozas, C. Segarra and M. Aguadé. 2001. DNA variation at the rp49 gene region in Drosophila madeirensis and D. subobscura from Madeira: inferences about the origin of an insular endemic species. J. Evol. Biol. 14: 379-387. (Article in PDF-format; 749 KB).  

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1990→2000

• Rozas, J. M. Hernández, V. M. Cabrera, A. Prevosti. 1990. Colonization of America by Drosophila subobscura: Effect of the founder event on the mitochondrial DNA polymorphism. Mol. Biol. Evol. 7: 103-109.

• Rozas, J. and M. Aguadé. 1990. Evidence of extensive genetic exchange in the rp49 region among polymorphic chromosome inversions in Drosophila subobscura. Genetics 126: 417-426.

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• Rozas, J. and M. Aguadé. 1991. Study of an isolated population at the nucleotide level: rp49 region of a Canarian population of Drosophila subobscura. Mol. Biol. Evol. 8: 202-211.

• Rozas, J. 1991. A program to optimize the design of oligonucleotides for PCR amplification. J. Heredity 82: 84.

• Rozas, J. and M. Aguadé.1991. Using restriction-map analysis to characterize the colonization process of Drosophila subobscura on the American continent. I. rp49 region. Mol. Biol. Evol 8: 447-457.

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• Larruga, J. M., J. Rozas, M. Hernández, A. M. González and V. M. Cabrera.1993. Latitudinal differences in chromosome A, sex linked allozymes, and mitochondrial DNA variation in Drosophila subobscura. Genetica 92: 67-74.

• Rozas, J. and M. Aguadé. 1993. Transfer of genetic information in the rp49 region of Drosophila subobscura between different chromosomal gene arrangements. Proc. Natl. Acad. Sci. USA 90: 8083-8087.

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• Rozas, J. and M. Aguadé. 1994. Gene conversion is involved in the transfer of genetic information between naturally occurring inversions of Drosophila. Proc. Natl. Acad. Sci. USA 91: 11517-11521.

• Rozas, J., C. Segarra, C. Zapata and G. Alvarez. 1995. Nucleotide polymorphism at the rp49 region of Drosophila subobscura: Lack of geographic subdivision within chromosomal arrangements in Europe. J. Evol. Biol. 8: 355-367.

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• Rozas, J. and R. Rozas. 1995. DnaSP, DNA sequence polymorphism: an interactive program for estimating Population Genetics parameters from DNA sequence data. Comput. Applic. Biosci. 11: 621-625.

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• Betrán, E., J. Rozas, A. Navarro and A. Barbadilla. 1997. The estimation of the number and the length distribution of Gene Conversion Tracts from population DNA sequence data. Genetics 146: 89-99.

• Rozas, J. and R. Rozas. 1997. DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis. Comput. Applic. Biosci. 13: 307-311.

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• Ramos-Onsins, S., C. Segarra, J. Rozas and M. Aguadé. 1998. Molecular and chromosomal phylogeny of the obscura group of Drosophila inferred from sequences of the rp49 gene region. Mol. Phylogenet. Evol. 9: 33-41.

• Khadem, M., J. Rozas, C. Segarra, A. Brehm and M. Aguadé. 1998. Tracing the colonization of Madeira and the Canary Islands by Drosophila subobscura through the study of the rp49 gene region.  J. Evol. Biol. 11: 439-452. (Article in PDF-format; 188 KB).

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• Rozas,  J., C. Segarra, G. Ribó and M. Aguadé. 1999. Molecular Population Genetics of the rp49 gene region in different chromosomal inversions of Drosophila subobscura. Genetics 151: 189-202. (Article in PDF-format; 875 KB).

• Rozas,  J. and R. Rozas. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175. (Article in PDF-format; 33 KB).

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