Jordi Abante

Postdoctoral Researcher under Prof. Josep M. Canals Coll and Prof. Petia Radeva , working on the development of computational methods for single-cell data to study Huntington's disease and other neurodegenerative diseases. He is also a lecturer (Professor Associate) in the Department of Mathematics and Computer Science at UB.

Profile summary

In 2014, Jordi received his BS in Industrial Engineering (power electronics and signals) from the Universitat Politècnica de Catalunya in Barcelona. After graduating, he went on to obtain an MS from the Electrical & Computer Engineering department at Texas A&M University. There, he joined the Center for Bioinformatics and Genomic Systems Engineering, where he was involved in several computational genomics research projects (Datta lab). In 2015, he was awarded the “la Caixa” fellowship to pursue research in computational genomics during his Ph.D. as a member of the Goutsias lab, developing computational methods to study epigenetic signatures in close collaboration with the Feinberg lab of the Johns Hopkins University School of Medicine. In addition to his research and Ph.D. coursework, he earned an MS focused on statistical learning from the Applied Mathematics & Statistics department at Johns Hopkins University in 2018. After successfully defending his dissertation entitled “Statistical Signal Processing Methods for Epigenetic Landscape Analysis” in May 2021, Jordi joined the Biomedical Data Science Department at Stanford University (Salzman & Ioannidis lab) as a Postdoctoral Research Fellow, being awarded the Stanford Center for Computational, Evolutionary and Human Genomics postdoctoral fellowship. In January 2023, he became a Postdoctoral Researcher in the Departments of Biomedical Sciences (Canals lab) and Mathematics and Computer Science at Universitat de Barcelona (Radeva lab), where he develops methods for multimodal single-cell data to study brain development and developmental alterations in Huntington’s disease. In September 2023, Jordi was appointed Lecturer (Professor Associat) at the Mathematics and Computer Science department at UB.

Latest publications

Jordi Abante has 19 publications on Google Scholar.
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DIVE: a reference-free statistical approach to diversity-generating and mobile genetic element discovery

2023   |   Jordi Abante, Peter L Wang, Julia Salzman   |   Genome Biology 24 (1), 240, 2023

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DNA methylation entropy is associated with DNA sequence features and developmental epigenetic divergence

2023   |   Yuqi Fang, Zhicheng Ji, Weiqiang Zhou, Jordi Abante, Michael A Koldobskiy, Hongkai Ji, Andrew P Feinberg   |   Nucleic Acids Research, 2023

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Assessing Tree-Based Phenotype Prediction on the UK Biobank

2023   |   Alex Meléndez, Cayetana López, David Bonet, Gerard Sant, Daniel Mas Montserrat, Jordi Abante, Manuel Rivas, Ferran Marqués, Alexander G Ioannidis   |   2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2023

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Converging genetic and epigenetic drivers of paediatric acute lymphoblastic leukaemia identified by an information-theoretic analysis

2021   |   Michael A Koldobskiy, Garrett Jenkinson, Jordi Abante, Varenka A Rodriguez DiBlasi, Weiqiang Zhou, Elisabet Pujadas, Adrian Idrizi, Rakel Tryggvadottir, Colin Callahan, Challice L Bonifant, Karen R Rabin, Patrick A Brown, Hongkai Ji, John Goutsias, Andrew P Feinberg   |   Nature biomedical engineering 5 (4), 360-376, 2021

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Estimating DNA methylation potential energy landscapes from nanopore sequencing data

2021   |   Jordi Abante, Sandeep Kambhampati, Andrew P Feinberg, John Goutsias   |   Scientific Reports 11 (21619), 2021

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STATISTICAL SIGNAL PROCESSING METHODS FOR EPIGENETIC LANDSCAPE ANALYSIS

2021   |   Jordi Abante Llenas   |   Johns Hopkins University, 2021

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Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

2020   |   Chenxi Qiu, Huiyan Jin, Irina Vvedenskaya, Jordi Abante Llenas, Tingting Zhao, Indranil Malik, Alex M Visbisky, Scott L Schwartz, Ping Cui, Pavel Čabart, Kang Hoo Han, William KM Lai, Richard P Metz, Charles D Johnson, Sing-Hoi Sze, B Franklin Pugh, Bryce E Nickels, Craig D Kaplan   |   Genome biology 21, 1-31, 2020

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Detection of haplotype-dependent allele-specific DNA methylation in WGBS data

2020   |   J Abante, Y Fang, AP Feinberg, J Goutsias   |   Nature communications 11 (1), 5238, 2020

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A dysregulated DNA methylation landscape linked to gene expression in MLL-rearranged AML

2020   |   Michael A Koldobskiy, Jordi Abante, Garrett Jenkinson, Elisabet Pujadas, Ashley Tetens, Feifei Zhao, Rakel Tryggvadottir, Adrian Idrizi, Andreas Reinisch, Ravindra Majeti, John Goutsias, Andrew P Feinberg   |   Epigenetics 15 (8), 841-858, 2020

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CpelTdm.jl: a Julia package for targeted differential DNA methylation analysis

2020   |   J. Abante, J. Goutsias   |   bioRxiv, 343020, 2020

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Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

2019   |   Michael P Menden, Dennis Wang, Mike J Mason, Bence Szalai, Krishna C Bulusu, Yuanfang Guan, Thomas Yu, Jaewoo Kang, Minji Jeon, Russ Wolfinger, Tin Nguyen, Mikhail Zaslavskiy, In Sock Jang, Zara Ghazoui, Mehmet Eren Ahsen, Robert Vogel, Elias Chaibub Neto, Thea Norman, Eric KY Tang, Mathew J Garnett, Giovanni Y Di Veroli, Stephen Fawell, Gustavo Stolovitzky, Justin Guinney, Jonathan R Dry, Julio Saez-Rodriguez   |   Nature communications 10 (1), 2674, 2019

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Ranking genomic features using an information-theoretic measure of epigenetic discordance

2019   |   Garrett Jenkinson, Jordi Abante, Michael A Koldobskiy, Andrew P Feinberg, John Goutsias   |   BMC bioinformatics 20, 1-17, 2019

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Promoter scanning during transcription initiation in Saccharomyces cerevisiae: Pol II in the “shooting gallery”

2019   |   Chenxi Qiu, Huiyan Jin, Irina Vvedenskaya, Jordi Abante Llenas, Tingting Zhao, Indranil Malik, Alex M Visbisky, Scott L Schwartz, Ping Cui, Pavel Čabart, Kang Hoo Han, William KM Lai, Richard P Metz, Charles D Johnson, Sing-Hoi Sze, B Franklin Pugh, Bryce E Nickels, Craig D Kaplan   |   Biorxiv, 810127, 2019

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An information-theoretic approach to the modeling and analysis of whole-genome bisulfite sequencing data

2018   |   Garrett Jenkinson, Jordi Abante, Andrew P Feinberg, John Goutsias   |   BMC bioinformatics 19, 1-23, 2018

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HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment

2017   |   Jordi Abante, Noushin Ghaffari, Charles D Johnson, Aniruddha Datta   |   BMC genomics 18, 1-13, 2017

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What are the most influencing factors in reconstructing a reliable transcriptome assembly?

2017   |   Noushin Ghaffari, Jordi Abante, Raminder Singh, Philip D Blood, Lenore Pipes, Christopher Mason, Charles D Johnson   |   bioRxiv, 220269, 2017

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Computational considerations in transcriptome assemblies and their evaluation, using high quality human rna-seq data

2016   |   Noushin Ghaffari, Jordi Abante, Raminder Singh, Philip D Blood, Charles D Johnson   |   Proceedings of the XSEDE16 Conference on Diversity, Big Data, and Science at …, 2016

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Disseny, control i implementació d'un inversor trifàsic per un vehicle elèctric

2014   |   Jordi Abante Llenas   |   Universitat Politècnica de Catalunya, 2014

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Fast, Flexible, and Free: Enabling Large-Scale Genome Assembly and Analysis with the Bridges Supercomputer

Philip Blood, Noushin Ghaffari, Arun S Seetharam, Lenore Pipes, Raminder Singh, Jordi Abante, Andrew J Severin, Charles D Johnson, Christopher E Mason   |   Plant and Animal Genome XXVI Conference (January 13-17, 2018), 0

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